PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof017390
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family HSF
Protein Properties Length: 173aa    MW: 18919.5 Da    PI: 10.1551
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-119631PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.53e-35511432103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++ +isws++g sfv++d++ f++++Lp++Fkh++f+SF+RQLn+YgF+kv+ ++         we++++ F kg+k+ll++ik
     Sof017390  51 FLTKVYDMVSDPATDAVISWSATGGSFVIWDSHVFERDLLPRHFKHNHFTSFIRQLNTYGFHKVDPDR---------WEWANEGFVKGQKHLLKTIK 138
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   rkk++
     Sof017390 139 RKKKS 143
                   **986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467857.75E-3547140IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-5547140IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.7E-3748140IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.5E-195174IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.3E-3251140IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-1989101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-19102114IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MGSKKRSPQH PASPAGGEVG AQTAGKATPV TAAPESAPVA VVPKPPDVAP FLTKVYDMVS  60
DPATDAVISW SATGGSFVIW DSHVFERDLL PRHFKHNHFT SFIRQLNTYG FHKVDPDRWE  120
WANEGFVKGQ KHLLKTIKRK KKSSQDVPSD LQSVPVKTAP GTENIEIRKI CGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-274514314123Heat shock factor protein 1
5d5v_D3e-274514023129Heat shock factor protein 1
5d5v_B3e-274514023129Heat shock factor protein 1
5d5u_B3e-274514023129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468244.11e-118hypothetical protein SORBIDRAFT_01g042370
SwissprotQ10PR41e-77HSFA9_ORYSJ; Heat stress transcription factor A-9
TrEMBLC5WSM11e-118C5WSM1_SORBI; Putative uncharacterized protein Sb01g042370
STRINGSb01g042370.11e-117(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.15e-41heat shock factor 1